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2e6f71842f
Author | SHA1 | Date |
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Lucas Frérot | 2e6f71842f | |
Lucas Frérot | 1bc69e350b |
89
rtenets
89
rtenets
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@ -1,7 +1,7 @@
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#!/usr/bin/env bash
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# Author: Lucas Frérot
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# Affiliation:
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# Sorbonne Université, CNRS, Institut Jean Le Rond d’Alembert,
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# Sorbonne Université, CNRS, Institut Jean Le Rond d'Alembert,
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# F-75005 Paris, France
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#
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# Copyright © 2024 Lucas Frérot
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@ -35,7 +35,7 @@ readonly NC='\033[0m'
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readonly ENDPOINT="https://git.dalembert.upmc.fr/api/v1"
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# Lab info
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readonly AFFILIATION="Sorbonne Université, CNRS, Institut Jean Le Rond d’Alembert, F-75005 Paris, France"
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readonly AFFILIATION="Sorbonne Université, CNRS, Institut Jean Le Rond d'Alembert, F-75005 Paris, France"
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# ----------------- Logging commands -----------------------
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@ -104,17 +104,17 @@ get_gitea_token(){
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else
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TOKEN="$(enter "gitea token: ")"
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fi
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readonly TOKEN
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}
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gitea() {
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check_api_prerequisites
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readonly TOKEN
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if ! is_set TOKEN; then
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get_gitea_token
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fi
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readonly TOKEN
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local method="$1"
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local request="$2"
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local data=""
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@ -172,6 +172,8 @@ init_repo() {
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\git init
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}
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# ----------------- Tree commands -----------------------
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# Make bash script stub
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script_stub() {
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local script_name="$1"
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@ -263,6 +265,8 @@ create_tenet_file_tree() {
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script_stub make_all_figures "Generating figures..."
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}
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# ----------------- Gitea commands -----------------------
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get_gitea_owner() {
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gitea /user GET | jq -r '.login'
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}
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@ -327,9 +331,25 @@ setup_dalembert_gitea() {
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setup_software_heritage_hook "${owner}" "${repo_name}" "${remote_http}"
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}
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# ----------------- Script subcommands commands -----------------------
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init-tree() {
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declare desc="usage: rtenets init-tree <directory>"
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local directory="$1"
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}
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init-gitea() {
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true
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}
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init-workflow() {
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true
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}
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# Create git repository
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create_repo() {
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create() {
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declare desc="usage: rtenets create <directory>"
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local repo_name="$1"
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info "recursively creating directory '${repo_name}'"
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mkdir -p "${repo_name}"
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@ -338,19 +358,70 @@ create_repo() {
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cd "${repo_name}"
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init_repo
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create_tenet_file_tree
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setup_dalembert_gitea
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)
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}
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# Print usage and exit
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usage() {
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true
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cat <<USAGE
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usage: $0 [--help,-h] [--version] command [args...]
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Available commands:
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- create: create and populate a repository
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- init-tree: populate a repository with README, AUTHORS, COPYING and test/
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- init-gitea: setup a remote on a gitea server with SoftwareHeritage hook
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- init-workflow: setup a Python virtual environment and Snakemake template
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- check: verify tenent compliance for a repository
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USAGE
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}
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version() {
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cat <<VERSION
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rtenets 0.0.1
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Copyright © 2024 Lucas Frérot
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This program comes with ABSOLUTELY NO WARRANTY;
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This is free software, and you are welcome to redistribute it
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under certain conditions;
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VERSION
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}
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main() {
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check_git_config
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create_tenet_file_tree
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local other_args=()
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local help_mode=0
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for i in "$@"; do
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case $i in
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-v|--version)
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version
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return 0
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;;
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-h|--help)
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help_mode=1
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;;
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*)
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other_args+=("${i}")
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;;
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esac
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done
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gitea /user GET
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local command="${other_args[0]}"
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if [[ "${help_mode}" == 1 ]]; then
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type "${command}" | sed -n -e 's/^.*declare desc="\(.*\)";/\1/p'
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fi
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# Subcommands trick
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# https://blogsh.github.io/2020/03/21/subcommands-in-bash-scripts.html
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declare -A COMMANDS=(
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[default]=usage
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[init-tree]=init-tree
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[init-gitea]=init-gitea
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[init-workflow]=init-workflow
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[create]=create
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)
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"${COMMANDS[${command:-default}]:-${COMMANDS[default]}}" "${other_args}"
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}
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main "$@"
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