fixed sourcing guard

rtenets

@@ -37,6 +37,13 @@ readonly ENDPOINT="https://git.dalembert.upmc.fr/api/v1"
 # Lab info
 readonly AFFILIATION="Sorbonne Université, CNRS, Institut Jean Le Rond d'Alembert, F-75005 Paris, France"
 
+# Files
+readonly MANDATORY_FILES=("README.md"
+                          "AUTHORS"
+                          "COPYING"
+                          "make_all_figures"
+                          "tests/run_all_tests")
+
 # ----------------- Logging commands -----------------------
 
 # Print error and exit
@@ -228,7 +235,7 @@ fetch_licence() {
 
 # Create README
 create_readme() {
-    local readme="README.md~"
+    local readme="${MANDATORY_FILES[0]}"
 
     if ! [[ -f "${readme}" ]]; then
         local project_name="$(cond_enter "project name: " PROJECT_NAME)"
@@ -302,14 +309,9 @@ check-tree() {
     fi
 
     # Test file structure
-    mandatory_files=("README.md~"
-                     "AUTHORS"
-                     "COPYING"
-                     "make_all_figures"
-                     "tests/run_all_tests")
-    for file in ${mandatory_files[*]}; do
+    for file in "${MANDATORY_FILES[@]}"; do
         if ! [[ -f "${file}" ]]; then
-            warning "file ${file} is missig"
+            warning "file ${file} is missing"
             check_failed=1
         fi
     done
@@ -425,7 +427,7 @@ usage: $0 [--help,-h] [--version,-v] command [args...]
 
 Available commands:
     - create: create and populate a repository
-    - init-tree: populate a repository with README, AUTHORS, COPYING and test/
+    - init-tree: populate a repository with README.md, AUTHORS, COPYING and test/
     - init-gitea: setup a remote on a gitea server with SoftwareHeritage hook
     - init-workflow: setup a Python virtual environment and Snakemake template
     - check: verify tenent compliance for a repository
@@ -478,9 +480,9 @@ main() {
         [check-tree]=check-tree
     )
 
-    "${COMMANDS[${command:-default}]:-${COMMANDS[default]}}" "${other_args}"
+    "${COMMANDS[${command:-default}]:-${COMMANDS[default]}}" "${other_args[@]:1}"
 }
 
 # Avoid executing main if sourced
 # https://stackoverflow.com/questions/2683279/how-to-detect-if-a-script-is-being-sourced
-(return 0 2&>/dev/null) && main "$@" || true
+( return 0 2>/dev/null ) && true || main "$@"